species:   Scscl
pid:       PID1737
parent:    Ssc-milR-213
paralog:   
locus:     NW_001820835.1:2399874-2399966
matures:   ['UGUUCCACGGAGAUCGUAGCAA', 'UACUACGCUUUCAAUGGACACC']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820835.1:2399874-2399966

9 out of bounds
4 alignments
1 proper strand
1 stranded perfect matches

        ************************                             ************************        
ACCCCUGACUUGUUCCACGGAGAUCGUAGCAAGCAUCGAGCUUUUGUCGCACAAGCUGAUCUCUACUACGCUUUCAAUGGACACCUUUUCUUG
..........(((.(((..((((.(((((..((.(((.(((((.((...)).))))))))))...))))).))))..))))))..........
----------UGUUCCACGGAGAUCGUAGCAA------------------------------------------------------------- l=22 a=0 c
---------------------------------------------------------------UACUACGCUUUCAAUGGACACC-------- l=22 a=0 c*
----------------------------------------------UCGCACAAGCUGAUCUCUACUA------------------------- l=22 a=1 ma
---------------------------------------------------------------UACUACGCUUUCAAUGGACACC-------- l=22 a=0 ma*

----------------------------------------------UCGCACAAGCUGAUCUCUACUA------------------------- l=22 a=1 (ma)

mb-00011
ax-1001011
ku-01
ss-110110001100
fn-001
